ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACTCCCTCTGTCCCATATT miRNA* TATGGATGGAGGGAGTAGAA mismatches: 0 bulges: 1 |
pre-miRNA
AAAAATGTTTATTACTCCCTCTGTCCCATATTAACTGACGAAATATTACATGTATCTAGACGCTTTTTGGATATAGATACATCCATATTTGGGCAAATTT
GAGTCACTTAATATGGATGGAGGGAGTAGAATATATGAA
dot-bracket secondary structure
....((((((..((((((((((((((.(((((((.((((..((..((..(((((((((....((....))...)))))))))(((....)))..))..))
..)))).))))))))))))))))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAAATGTTTATTACTCCCTCTGTCCCATATTAACTGACGAAATATTACATGTATCTAGACGCTTTTTGGATATAGATACATCCATATTTGGGCAAATTT
GAGTCACTTAATATGGATGGAGGGAGTAGAATATATGAA
dot-bracket secondary structure
....((((((..((((((((((((((.(((((((.((((..((..((..(((((((((....((....))...)))))))))(((....)))..))..))
..)))).))))))))))))))))))))))))))).....
SIMILARITIES| miRBase bdi-MIR1135: 1e-16 PMRD bdi-miR1135: 1e-16 microPC no hits | UniProt no hits RFAM MIR1122: 1e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
