ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTACTCCCTCCGATCCTAAA miRNA* TAAGATCGGAGTTAGTATT mismatches: 4 bulges: 0 |
pre-miRNA
CTAGACCGATGAGCTCTGTCATGTACTCCCTCCGATCCTAAATTTTTGTCTCAAATTTGCCCAAATATGGATGTATCTATTCATAAAAAGTGTCTAAATA
CATGTCATATTTTGACAACAATTTAAGATCGGAGTTAGTATT
dot-bracket secondary structure
...(((.((.....)).)))..(((((..((((((((.((((((.(((((............((((((((((((((.((..(((.....)))..)).)))
))).)))))))).))))).)))))).))))))))..))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTAGACCGATGAGCTCTGTCATGTACTCCCTCCGATCCTAAATTTTTGTCTCAAATTTGCCCAAATATGGATGTATCTATTCATAAAAAGTGTCTAAATA
CATGTCATATTTTGACAACAATTTAAGATCGGAGTTAGTATT
dot-bracket secondary structure
...(((.((.....)).)))..(((((..((((((((.((((((.(((((............((((((((((((((.((..(((.....)))..)).)))
))).)))))))).))))).)))))).))))))))..))))).
SIMILARITIES| miRBase bdi-MIR1135: 1e-16 PMRD bdi-miR1135: 1e-16 microPC no hits | UniProt no hits RFAM MIR1122: 2e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
