ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCCCTCCGTTCCATAAT miRNA* TATGGAACGGAGTGAGTATAT mismatches: 1 bulges: 0 |
pre-miRNA
GTTGTTTATTAATACTCCCTCCGTTCCATAATTCTTCTCTCAAATTTGTCCAAATATGAATGTATCTATTCCTGAAAAGTGTCTAGATACATGTAATATT
TCGACAAGAATTATGGAACGGAGTGAGTATATACTTATAC
dot-bracket secondary structure
...........((((((.(((((((((((((((((...........((((.((((((..(((((((((...((....))....)))))))))...)))))
).))))))))))))))))))))).))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTGTTTATTAATACTCCCTCCGTTCCATAATTCTTCTCTCAAATTTGTCCAAATATGAATGTATCTATTCCTGAAAAGTGTCTAGATACATGTAATATT
TCGACAAGAATTATGGAACGGAGTGAGTATATACTTATAC
dot-bracket secondary structure
...........((((((.(((((((((((((((((...........((((.((((((..(((((((((...((....))....)))))))))...)))))
).))))))))))))))))))))).))))))..........
SIMILARITIES| miRBase bdi-MIR1135: 0.000000000000002 PMRD bdi-miR1135: 0.000000000000002 microPC no hits | UniProt no hits RFAM MIR1122: 1e-41 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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