ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACTCACTCCGTCCCATATT miRNA* TAGGGGATGGAGGGAGTAATT mismatches: 2 bulges: 0 |
pre-miRNA
CTGTTGATCTAAGTTACTCACTCCGTCCCATATTAATTGTTCACAACTTAATAGGGGATGGAGGGAGTAATTTATTCTGGTA
dot-bracket secondary structure
.....((..((((((((((.(((((((((.((((((..(((...))))))))).))))))))).)))))))))).)).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGTTGATCTAAGTTACTCACTCCGTCCCATATTAATTGTTCACAACTTAATAGGGGATGGAGGGAGTAATTTATTCTGGTA
dot-bracket secondary structure
.....((..((((((((((.(((((((((.((((((..(((...))))))))).))))))))).)))))))))).)).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM MIR1122: 0.0003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
