ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCTGCCTCAAGCTTGCTGC miRNA* GTCCGACTAGAGGCAGCAACT mismatches: 2 bulges: 2 |
pre-miRNA
CCACGCGTCCGACTAGAGGCAGCAACTCCATAACTTGCGGAAAGCTTGTTGGATGATGACCATGCCAATGATTTTACCGAAGTTATGCAGTTGCTGCCTC
AAGCTTGCTGCCTCCC
dot-bracket secondary structure
....(((..(((((.((((((((((((.((((((((.(((.(((.((((((((((.....))).))))))).))).))))))))))).))))))))))))
.)).))).))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCACGCGTCCGACTAGAGGCAGCAACTCCATAACTTGCGGAAAGCTTGTTGGATGATGACCATGCCAATGATTTTACCGAAGTTATGCAGTTGCTGCCTC
AAGCTTGCTGCCTCCC
dot-bracket secondary structure
....(((..(((((.((((((((((((.((((((((.(((.(((.((((((((((.....))).))))))).))).))))))))))).))))))))))))
.)).))).))).....
SIMILARITIES| miRBase bdi-MIR444: 7e-58 PMRD bdi-miR444: 7e-58 microPC miR444: 0.000000006 | UniProt no hits RFAM MIR444: 5e-16 | most similar mature miRNAs |
Identical with: bdi-MIR444 from miRBase (MNEST041805) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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