ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR2504
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACCAAGTTTATAGCAAAA miRNA* TTTTCTCTAAACTGGTTAAGA mismatches: 2 bulges: 2 |
pre-miRNA
CTTCTGAAAGTTTGACCAAGTTTATAGCAAAATATGCTAACATCTACTCTAAATAAGTTTTATTAAATCTGTCATGACATGTATCTTCATAGTATACTTA
CTTGATATAGATATTTATTTATTTTTTCTCTAAACTGGTTAAGAAGTTTGAC
dot-bracket secondary structure
.....(((..((((((((.(((((.((.((((((....((.(((((...(((.(((((.((((.((((.(((....))).))...)).))))...)))))
.)))...))))).))....))))))..)).)))))))))))))...)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTTCTGAAAGTTTGACCAAGTTTATAGCAAAATATGCTAACATCTACTCTAAATAAGTTTTATTAAATCTGTCATGACATGTATCTTCATAGTATACTTA
CTTGATATAGATATTTATTTATTTTTTCTCTAAACTGGTTAAGAAGTTTGAC
dot-bracket secondary structure
.....(((..((((((((.(((((.((.((((((....((.(((((...(((.(((((.((((.((((.(((....))).))...)).))))...)))))
.)))...))))).))....))))))..)).)))))))))))))...)))...
SIMILARITIES| miRBase bdi-MIR5169: 0.000000000000008 PMRD bdi-miR2504c: 0.0005 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
