ABOUT THIS RECORDspecies: Citrus clementina
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Citrus clementina Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATCATCTGGCAGTTTCACC miRNA* TGAAGCTGCCAGCATGATCTGA mismatches: 1 bulges: 1 |
pre-miRNA
ATCATCGTGTCATATTCGTGCACTAGTAGTAGTTGAAGCTGCCAGCATGATCTGAACTTTCCTTGACCTCCATCTCTAGGGAAAGGCCAGATCATCTGGCA
GTTTCACCTATTGATGGTAGCATGGCCAGAAACCCTA
dot-bracket secondary structure
).....((.((....((((((((((.((((((.((((((((((((.((((((((..(((((((((...........)))))))))..))))))))))))))
)))))).)))))).)))).))))))...)).))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCATCGTGTCATATTCGTGCACTAGTAGTAGTTGAAGCTGCCAGCATGATCTGAACTTTCCTTGACCTCCATCTCTAGGGAAAGGCCAGATCATCTGGCA
GTTTCACCTATTGATGGTAGCATGGCCAGAAACCCTA
dot-bracket secondary structure
).....((.((....((((((((((.((((((.((((((((((((.((((((((..(((((((((...........)))))))))..))))))))))))))
)))))).)))))).)))).))))))...)).))....
SIMILARITIES| miRBase ccl-MIR167b: 9.0E-67 PMRD cle-miR167: 2.0E-49 microPC miR167: 2.0E-36 | UniProt no hits RFAM 1MIR167_1: 1.0E-13 | most similar mature miRNAs |
Identical with: ccl-MIR167a from miRBase (MNEST041208), csi-MIR167a from miRBase , ctr-MIR167 from miRBase , miR167 from microPC , cle-miR167 from PMRD , miR167 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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