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ABOUT THIS RECORD
ID:
MNEST003135
species:
Citrus clementina
miRNA family:
MIR396
source:
miRNEST
Taxonomy by NCBI:
Citrus clementina
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGAAAGCTGTGGGAGAACAT
miRNA*
GCTTTTCCACAGCTTTCTTGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
AGTCCTGGTCAT
GCTTTTCCACAGCTTTCTTGA
ACTTCCACTGTTTGCTGATTAATACACGGCTCTTGCTAGCTAGGCGCCGTATGTAGACACCGCGCGC
CATGGGAGCTC
AAGAAAGCTGTGGGAGAACAT
GGCACACCT
dot-bracket secondary structure
.......(((((
(.(((((((((((((((((((
.((((((..((.(((((.((.(((.(((((.((((.....)))).))))).))).))))..))).))
..)))))).))
))))))))))))))))).)))
)))......
SIMILARITIES
miRBase
ccl-MIR396
:
3e-76
PMRD
gma-miR396b
:
0.000000000000008
microPC
miR396
:
8e-58
UniProt
no hits
RFAM
MIR396: 0.000000000002
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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