ABOUT THIS RECORDspecies: Helianthus annuus
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTTCTCTTTCTGTCAGG mismatches: 0 bulges: 2 |
pre-miRNA
TTGGTTGAGAACTGACAGAAGAGAGTGAGCACAGGCCGGCAACTGTATACGGAGATTATACTCTTGTTGGAATTATGCGTGTGCTCACTTCTCTTTCTGTC
AGGGTCCTATT
dot-bracket secondary structure
).......((.((((((((((((((((((((((..(((((((..(((((.......)))))..))))))).........))))))))).)))).)))))))
))..)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTGGTTGAGAACTGACAGAAGAGAGTGAGCACAGGCCGGCAACTGTATACGGAGATTATACTCTTGTTGGAATTATGCGTGTGCTCACTTCTCTTTCTGTC
AGGGTCCTATT
dot-bracket secondary structure
).......((.((((((((((((((((((((((..(((((((..(((((.......)))))..))))))).........))))))))).)))).)))))))
))..)).....
SIMILARITIES| miRBase tcc-MIR156c: 9.0E-8 PMRD vvi-miR156b: 3.0E-7 microPC miR156: 6.0E-46 | UniProt no hits RFAM 6mir-156: 6.0E-6 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045182) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
