ABOUT THIS RECORDspecies: Helianthus annuus
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCATCA miRNA* ATGATGATGAGGTGAAGGCT mismatches: 1 bulges: 1 |
pre-miRNA
CATAATCATCATCATCATCATCATCATCATCATATCCATAGCGATTCTCATTCGCGGGACGATATTCATCTCTTGAAATTGTAATTGACAATTTTTATTT
AGGGTTAAGTTATGGCCCTGCTGCTGCTATGGAAGAAATCAGTTCCTCCCCTGGGACGTCGATTATTGTGGATTAATCATCATCATCATCATCTGTCAAG
AGACTATCACTTATGCGATGATGATGATGAGGTGAAGGCTGC
dot-bracket secondary structure
.....((.(((((.((((((((((((((..(((((((...((((.......)))).))).((((....((((((((.((.(((((((((..(((((((.(
(((((((.....))))))))........)))))))......(((((......)))))))))))))).))((((.................)))).)))))
))).))))...)))).))))))))))))))))))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATAATCATCATCATCATCATCATCATCATCATATCCATAGCGATTCTCATTCGCGGGACGATATTCATCTCTTGAAATTGTAATTGACAATTTTTATTT
AGGGTTAAGTTATGGCCCTGCTGCTGCTATGGAAGAAATCAGTTCCTCCCCTGGGACGTCGATTATTGTGGATTAATCATCATCATCATCATCTGTCAAG
AGACTATCACTTATGCGATGATGATGATGAGGTGAAGGCTGC
dot-bracket secondary structure
.....((.(((((.((((((((((((((..(((((((...((((.......)))).))).((((....((((((((.((.(((((((((..(((((((.(
(((((((.....))))))))........)))))))......(((((......)))))))))))))).))((((.................)))).)))))
))).))))...)))).))))))))))))))))))).))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
