ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf298
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGATGACGCCGGAGAGAA miRNA* TTCTCCGCTCTCGCCTCCGCC mismatches: 4 bulges: 0 |
pre-miRNA
TTCTGATGAATCTCGGTGATGCATACTTGGTTTTCTCCGCTCTCGCCTCCGCCTGACTCTTCCTCTTCTCCTTCATCTTCTGCTTCTTCTTCCATTGGGA
GGGAATAGCGACGACGGTGAGAAATCGTCGGAGGACGGTGGAGATGACGCCGGAGAGAATGAAGTGGAGTCTCCGCTATAAAGGTCTC
dot-bracket secondary structure
..((((......)))).(((...(((((.((((((((((...(((.(((((((....((((((..(((((..((.((.((.(((..(((((((....)))
))))..))))).)).)).)))))......)))))).))))))).)))...)))))))))).)))))..)))...(((.....)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTCTGATGAATCTCGGTGATGCATACTTGGTTTTCTCCGCTCTCGCCTCCGCCTGACTCTTCCTCTTCTCCTTCATCTTCTGCTTCTTCTTCCATTGGGA
GGGAATAGCGACGACGGTGAGAAATCGTCGGAGGACGGTGGAGATGACGCCGGAGAGAATGAAGTGGAGTCTCCGCTATAAAGGTCTC
dot-bracket secondary structure
..((((......)))).(((...(((((.((((((((((...(((.(((((((....((((((..(((((..((.((.((.(((..(((((((....)))
))))..))))).)).)).)))))......)))))).))))))).)))...)))))))))).)))))..)))...(((.....)))...
SIMILARITIES| miRBase no hits PMRD ath-miRf10571-akr: 3e-30 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
