ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf446
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATCAGGAGGTTCAGTCATGC miRNA* GTGGCTTTATCGCCGTGTT mismatches: 4 bulges: 2 |
pre-miRNA
GTCCTGGAAAAGGAATGCACTCGTGGCTTTATCGCCGTGTTCTAAACGAATATCAGGAGGTTCAGTCATGCACTGCATTCACTAGCATCT
dot-bracket secondary structure
...((((.....(((((((..(((((((..(((.((((((((.....))))))..)).)))..)))))))...))))))).)))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GTCCTGGAAAAGGAATGCACTCGTGGCTTTATCGCCGTGTTCTAAACGAATATCAGGAGGTTCAGTCATGCACTGCATTCACTAGCATCT
dot-bracket secondary structure
...((((.....(((((((..(((((((..(((.((((((((.....))))))..)).)))..)))))))...))))))).)))).....
SIMILARITIES| miRBase no hits PMRD ath-miRf10981-akr: 1e-18 microPC no hits | UniProt sp|Q9ZU25|MPPA1_ARATH: 0.00000000008 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
