ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf1541
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGGTGTTCGACGAAATGCCT miRNA* GCTCTTGTTAAGCGCTTGCT mismatches: 5 bulges: 1 |
pre-miRNA
CTCATGCTCTCCAGGTGTTCGACGAAATGCCTCATAGAGATCACATCGCCTGGGCCTCGGTTCTCACAGCTCTTAATCAAGCCAATCTCTCTGGTAAGAC
ACGGTCGGTATTTTGCTTCAGTGGCGTTCGAGCTCTGGGTTGCGCTCCTGATGATTTTGTGTTCTCGCGCTCTTGTTAAGCGCTTGCTGCTAACTT
dot-bracket secondary structure
.....((....((((((((.(((((...((......((((.(((((((...((((..((...((((.(((((........((((........(((((((.
((.....)).)))))))....))))....))))).)))).)).)).))...)))...)))).))))..))..))))).))))))))..))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTCATGCTCTCCAGGTGTTCGACGAAATGCCTCATAGAGATCACATCGCCTGGGCCTCGGTTCTCACAGCTCTTAATCAAGCCAATCTCTCTGGTAAGAC
ACGGTCGGTATTTTGCTTCAGTGGCGTTCGAGCTCTGGGTTGCGCTCCTGATGATTTTGTGTTCTCGCGCTCTTGTTAAGCGCTTGCTGCTAACTT
dot-bracket secondary structure
.....((....((((((((.(((((...((......((((.(((((((...((((..((...((((.(((((........((((........(((((((.
((.....)).)))))))....))))....))))).)))).)).)).))...)))...)))).))))..))..))))).))))))))..))......
SIMILARITIES| miRBase no hits PMRD osa-miRf10734-akr: 0.0006 microPC no hits | UniProt sp|O23266|PP308_ARATH: 2e-17 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
