ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf234
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCGACGGTGGTGAGGACGA miRNA* TCCTCCTCCACCGCCGCCGGA mismatches: 3 bulges: 1 |
pre-miRNA
CAGGACTACCGTGTCCTCCTCCACCGCCGCCGGACGAGTTTACTGAGCTGGCGACGGTGGTGAGGACGACGGTAGTGGA
dot-bracket secondary structure
....((((((((((((((..((((((.((((((...((....))...)))))).)))))).)))))).))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
CAGGACTACCGTGTCCTCCTCCACCGCCGCCGGACGAGTTTACTGAGCTGGCGACGGTGGTGAGGACGACGGTAGTGGA
dot-bracket secondary structure
....((((((((((((((..((((((.((((((...((....))...)))))).)))))).)))))).))))))))...
SIMILARITIES| miRBase no hits PMRD ath-miRf10377-akr: 8e-29 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
