ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf17
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCGACCCCCAGGTCGAGTG miRNA* CTCGACCCCCTGGTCGAGTAT mismatches: 4 bulges: 0 |
pre-miRNA
TCCAGCACCATACTCGACCCCCAGGTCGAGTGACTTTGGAGCCATTCTTCCCATCTACTCGACCCCCTGGTCGAGTATCCTCAGCT
dot-bracket secondary structure
...(((...((((((((((....(((((((((.....((((......))))....)))))))))....)))))))))).....)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCAGCACCATACTCGACCCCCAGGTCGAGTGACTTTGGAGCCATTCTTCCCATCTACTCGACCCCCTGGTCGAGTATCCTCAGCT
dot-bracket secondary structure
...(((...((((((((((....(((((((((.....((((......))))....)))))))))....)))))))))).....)))
SIMILARITIES| miRBase no hits PMRD ath-miRf11118-akr: 1e-43 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ath-miRf10223-akr from PMRD (MNEST047323) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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