ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf519
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTATAGCATAATGAGCAATCA miRNA* ACTGCTCGTGATGTTATATCA mismatches: 2 bulges: 0 |
pre-miRNA
AAGTTTTAAACGAAGAACTTGGTATAGCATAATGAGCAATCAGCCTGGGAAACTCAATTGGTTGTTTTCTCAGTAGACTGACTGCTCGTGATGTTATATC
ATTTTTCTCTAACGCTGGA
dot-bracket secondary structure
.(((.(((...((((((..(((((((((((.(((((((.((((.((((((((..(((....))).))))))))....)))).))))))).))))))))))
)))))))..))).)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
AAGTTTTAAACGAAGAACTTGGTATAGCATAATGAGCAATCAGCCTGGGAAACTCAATTGGTTGTTTTCTCAGTAGACTGACTGCTCGTGATGTTATATC
ATTTTTCTCTAACGCTGGA
dot-bracket secondary structure
.(((.(((...((((((..(((((((((((.(((((((.((((.((((((((..(((....))).))))))))....)))).))))))).))))))))))
)))))))..))).)))...
SIMILARITIES| miRBase no hits PMRD ath-miRf11142-akr: 6e-40 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
