ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf123
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTTGTTGGTTCAACAACATA miRNA* TATTGTTGAACCAACAACATT mismatches: 2 bulges: 0 |
pre-miRNA
AGAACATAGATTAGCCTAAATATATTGTTGAACCAACAACATTATTTGGTCATGATCAAACAATGTCCGTTTTGTAGTTGTTGGTTCAACAACATATTTT
GGCGCAATTCAATTA
dot-bracket secondary structure
........((...(((.((((((.((((((((((((((((..((..(((.(((.........))).)))...))..)))))))))))))))).)))))).
))).....)).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AGAACATAGATTAGCCTAAATATATTGTTGAACCAACAACATTATTTGGTCATGATCAAACAATGTCCGTTTTGTAGTTGTTGGTTCAACAACATATTTT
GGCGCAATTCAATTA
dot-bracket secondary structure
........((...(((.((((((.((((((((((((((((..((..(((.(((.........))).)))...))..)))))))))))))))).)))))).
))).....)).....
SIMILARITIES| miRBase no hits PMRD ath-miRf10052-akr: 6e-46 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ath-miRf10052-akr from PMRD (MNEST047152) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
