ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: miR161.1
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAAGTGACTACATCGGGGT miRNA* CCTGGTTTAGTCACTTTCACT mismatches: 1 bulges: 0 |
pre-miRNA
ATGCATTGAAAGTGACTACATCGGGGTTCCGATTTTTTTTGTTCTTCATATGATGAAGCGGAAACAGTAATCAACCCTGGTTTAGTCACTTTCACTGCA
dot-bracket secondary structure
.((((.((((((((((((.(((((((((..((((....(((((((((((...))))))....))))).))))))))))))).)))))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
ATGCATTGAAAGTGACTACATCGGGGTTCCGATTTTTTTTGTTCTTCATATGATGAAGCGGAAACAGTAATCAACCCTGGTTTAGTCACTTTCACTGCA
dot-bracket secondary structure
.((((.((((((((((((.(((((((((..((((....(((((((((((...))))))....))))).))))))))))))).)))))))))))).))))
SIMILARITIES| miRBase ath-MIR161: 4e-37 PMRD ath-miRf10978-akr: 4e-37 microPC miR161: 4e-37 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
