ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf292
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTTTGGCACCTTTTTTGGCG miRNA* CCAACAGCTTGCTAGAGGAC mismatches: 4 bulges: 1 |
pre-miRNA
TTCTCCATGGCCGTCGTTCAAGCCAACAGCTTGCTAGAGGACCAGAACCAGCTCGAGTCTGGCTCTCTTAGCTCCCACGACTCTTGTCCCTTTGGCACCT
TTTTTGGCGTCTACGACGGCCACGGTGG
dot-bracket secondary structure
.((.((.((((((((((....(((((.((..(((((((((((.(((...((((.((((...))))....))))........))).)).)))))))))...
)).)))))....)))))))))).)).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
TTCTCCATGGCCGTCGTTCAAGCCAACAGCTTGCTAGAGGACCAGAACCAGCTCGAGTCTGGCTCTCTTAGCTCCCACGACTCTTGTCCCTTTGGCACCT
TTTTTGGCGTCTACGACGGCCACGGTGG
dot-bracket secondary structure
.((.((.((((((((((....(((((.((..(((((((((((.(((...((((.((((...))))....))))........))).)).)))))))))...
)).)))))....)))))))))).)).))
SIMILARITIES| miRBase no hits PMRD ath-miRf10245-akr: 3e-57 microPC no hits | UniProt sp|Q5PNS9|P2C64_ARATH: 0.000000000000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
