ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR2936
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGAGAGAGAGAACACAGACG miRNA* TCTGTTTTCTCTCTTTTAAGAA mismatches: 2 bulges: 0 |
pre-miRNA
CTTCAAACCATTTTCGAAAGCCTTGAGAGAGAGAACACAGACGATACCAACTTTCTTCAATCTCGTTGCCGCAGCTATAATTATCTCATTCCTCGGATAT
ATCTCTCCTTCTGCGGGGGGGACAAGAAGATACAAGAATAAAAAGTCTGTTTTCTCTCTTTTAAGAAACCACTTACTTCGAAAAT
dot-bracket secondary structure
.........(((((((((((.((((((((((((((.((((((...........(((((..((((....((((((.......(((((........))))).
..........))))))..))))...)))))..............)))))).))))))))))))))......))...)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTCAAACCATTTTCGAAAGCCTTGAGAGAGAGAACACAGACGATACCAACTTTCTTCAATCTCGTTGCCGCAGCTATAATTATCTCATTCCTCGGATAT
ATCTCTCCTTCTGCGGGGGGGACAAGAAGATACAAGAATAAAAAGTCTGTTTTCTCTCTTTTAAGAAACCACTTACTTCGAAAAT
dot-bracket secondary structure
.........(((((((((((.((((((((((((((.((((((...........(((((..((((....((((((.......(((((........))))).
..........))))))..))))...)))))..............)))))).))))))))))))))......))...)))))))))
SIMILARITIES| miRBase ath-MIR2936: 2e-74 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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