ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf28
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTGGTGTCGGTCGACACTA miRNA* GTGTCGATCGACACCAAGGGT mismatches: 3 bulges: 0 |
pre-miRNA
CACCCAGGTGGTGTCGGTCGACACTATCAATGTGTGTCGAGCGATTTTGGAGATCAATGTCGAGCTTGCTCGATTCTGCTTCGTCACAGCCTGATGTCTC
GTATTATGCGATGGTGTCGATCGACACCAAGGGTTG
dot-bracket secondary structure
.((((...((((((((((((((((((((..((((.(((((((((.(((((.........))))).)))))))))..........))))((.(((((....
.))))).)))))))))))))))))))))).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CACCCAGGTGGTGTCGGTCGACACTATCAATGTGTGTCGAGCGATTTTGGAGATCAATGTCGAGCTTGCTCGATTCTGCTTCGTCACAGCCTGATGTCTC
GTATTATGCGATGGTGTCGATCGACACCAAGGGTTG
dot-bracket secondary structure
.((((...((((((((((((((((((((..((((.(((((((((.(((((.........))))).)))))))))..........))))((.(((((....
.))))).)))))))))))))))))))))).))))..
SIMILARITIES| miRBase ath-MIR855: 0.0004 PMRD ath-miRf10423-akr: 3e-60 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
