miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST003267
species:
Arabidopsis thaliana
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATCCTCATCATCATCGTCC
miRNA*
ATGATGATGCTTGATTCATAAAT
mismatches:
4
bulges:
2
View larger
pre-miRNA
AGGG
ATGATGATGCTTGATTCATAAAT
TAAATACCAAGGTATATTATTAAAGTGCTTTAGAGAAAATAAACACACCAATAGAAAAACGAACGAAACTCCT
ACAAGATGAATTTCACTTTTAAAAATCCCAAAACCTTTTCTCAATCCTCATTCTTGATGAACAGAGAATGACCTGAATTATATTTTCACGCAATCCTTTT
ATGTCTGGTAGAGCGTAGTAAAAGATTACTGTTGCTTGCATTCGGGTGGCCTCTCATCTTGTTTACCTTCACCAACTATCTGAGATCTCCCTCCCTTCTT
GTTGCCGATTGATGGCTTCTTTTTGGTCTTGCTTTCTTCT
TCATCCTCATCATCATCGTCC
TCCTCATCCT
dot-bracket secondary structure
.(((
(((((((((..(((...((.((.
........(((((((.........))))))).((((((.(((....(((((.((((....(((..........
((((((((((((..............................)))..((((((((........))))))))..((((.......)))).((...(((...
((((..(((((...(((((.....)))))..))))).))))..)))..))...))))))))).....)))...(((.....(((......))).......
)))((((.....))))))))..))))).))).)))))).)
).))..))).)))))))))))
).........
SIMILARITIES
miRBase
osa-MIR414
:
0.00008
PMRD
osa-miR414
:
0.00008
microPC
no hits
UniProt
no hits
RFAM
mir-598: 0.0004
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
degradome data
download this record