miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST003267
species: Arabidopsis thaliana
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCCTCATCATCATCGTCC

miRNA*
 ATGATGATGCTTGATTCATAAAT

mismatches: 4
bulges: 2
View larger
pre-miRNA
 AGGGATGATGATGCTTGATTCATAAATTAAATACCAAGGTATATTATTAAAGTGCTTTAGAGAAAATAAACACACCAATAGAAAAACGAACGAAACTCCT
ACAAGATGAATTTCACTTTTAAAAATCCCAAAACCTTTTCTCAATCCTCATTCTTGATGAACAGAGAATGACCTGAATTATATTTTCACGCAATCCTTTT
ATGTCTGGTAGAGCGTAGTAAAAGATTACTGTTGCTTGCATTCGGGTGGCCTCTCATCTTGTTTACCTTCACCAACTATCTGAGATCTCCCTCCCTTCTT
GTTGCCGATTGATGGCTTCTTTTTGGTCTTGCTTTCTTCTTCATCCTCATCATCATCGTCCTCCTCATCCT

dot-bracket secondary structure
.((((((((((((..(((...((.((.........(((((((.........))))))).((((((.(((....(((((.((((....(((..........
((((((((((((..............................)))..((((((((........))))))))..((((.......)))).((...(((...
((((..(((((...(((((.....)))))..))))).))))..)))..))...))))))))).....)))...(((.....(((......))).......
)))((((.....))))))))..))))).))).)))))).)).))..))).)))))))))))).........


SIMILARITIES
miRBase osa-MIR414: 0.00008

PMRD osa-miR414: 0.00008

microPC no hits		UniProt no hits

RFAM mir-598: 0.0004		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record




Liczniki na strone;