ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
TAGAGTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCA
GGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAAAAAA
dot-bracket secondary structure
........((((.(((((.((.((((((.((((((((((.(((((.((((((((((((...)))))...((.(((.((((((......)))))).)))))
.))))))).))))).)))))))))).)))))).)).)).))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TAGAGTCTCACCATCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCA
GGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCCTCGAGGTGTAAAAAA
dot-bracket secondary structure
........((((.(((((.((.((((((.((((((((((.(((((.((((((((((((...)))))...((.(((.((((((......)))))).)))))
.))))))).))))).)))))))))).)))))).)).)).))))))).......
SIMILARITIES| miRBase ath-MIR168a: 2e-74 PMRD ath-miR168a: 2e-74 microPC miR168: 3e-54 | UniProt no hits RFAM MIR168: 1e-75 | most similar mature miRNAs |
Identical with: ath-miRf10239-akr from PMRD (MNEST047339) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
