ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf17
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCTCGGGGTTGAGT miRNA* GCGACCTTGGGGTCGAGTGAT mismatches: 2 bulges: 0 |
pre-miRNA
GAGTGATTGTCAGGTGATGGGATGAAGACACGCGACCTTGGGGTCGAGTGATGTGGTGAAGTAGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGATCT
GTTGAGATCTTGAAGCTTCTACTCGACCTCGGGGTTGAGTGGTTTGACATGATCCGTCCCGCTTCTTC
dot-bracket secondary structure
((....))....((.(((((((((.((((((.(((((((((((((((((((.((..(((.((..(((((.....(((((((((....)))))))))...)
))))..)).)))..)).)).))))))))))))))))).)).))))..)))..))))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGTGATTGTCAGGTGATGGGATGAAGACACGCGACCTTGGGGTCGAGTGATGTGGTGAAGTAGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGATCT
GTTGAGATCTTGAAGCTTCTACTCGACCTCGGGGTTGAGTGGTTTGACATGATCCGTCCCGCTTCTTC
dot-bracket secondary structure
((....))....((.(((((((((.((((((.(((((((((((((((((((.((..(((.((..(((((.....(((((((((....)))))))))...)
))))..)).)))..)).)).))))))))))))))))).)).))))..)))..))))))))........
SIMILARITIES| miRBase no hits PMRD ath-miRf10335-akr: 1e-63 microPC no hits | UniProt no hits RFAM MIR854: 0.0006 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
