ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf16
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCAGGGGGTCGAGT miRNA* TCCACCGGGGGTCGAGTAAT mismatches: 4 bulges: 1 |
pre-miRNA
GTGATGGTGGTGAGTGATGATACTCGACCAGGGGGTCGAGTAACGTGGTAAAATGAATGGTCCAGTGTGGTCAGGTGGTGTGGCGAAACGGTACTCCACC
GGGGGTCGAGTAATGTCCTCCAGTGGCCTGA
dot-bracket secondary structure
.....(((.(.(((.((((.(((((((((....(((.(((((.(((.((....((..(((.(((...))))))..)).....))...))).))))).)))
...))))))))).)))))))...).)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
Source sequences
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GTGATGGTGGTGAGTGATGATACTCGACCAGGGGGTCGAGTAACGTGGTAAAATGAATGGTCCAGTGTGGTCAGGTGGTGTGGCGAAACGGTACTCCACC
GGGGGTCGAGTAATGTCCTCCAGTGGCCTGA
dot-bracket secondary structure
.....(((.(.(((.((((.(((((((((....(((.(((((.(((.((....((..(((.(((...))))))..)).....))...))).))))).)))
...))))))))).)))))))...).)))...
SIMILARITIES| miRBase no hits PMRD ath-miRf11177-akr: 5e-28 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
Source sequences
download this record
