ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TATTGGTGCGGTTCAATCAGA mismatches: 0 bulges: 0 |
pre-miRNA
ACATCAAATACGAGATATTGGTGCGGTTCAATCAGAAAACCGTACTCTTTTGTTTTAAAGATCGGTTTATTTGATTGAGCCGTGCCAATATCACGCGTTT
AAAT
dot-bracket secondary structure
.....((((.((.(((((((((((((((((((((((((((((...(((((......))))).)))))).))))))))))))))))))))))).)).))))
....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
ACATCAAATACGAGATATTGGTGCGGTTCAATCAGAAAACCGTACTCTTTTGTTTTAAAGATCGGTTTATTTGATTGAGCCGTGCCAATATCACGCGTTT
AAAT
dot-bracket secondary structure
.....((((.((.(((((((((((((((((((((((((((((...(((((......))))).)))))).))))))))))))))))))))))).)).))))
....
SIMILARITIES| miRBase ath-MIR171c: 1e-52 PMRD ath-miR171c: 1e-52 microPC miR171: 0.00000008 | UniProt no hits RFAM MIR171_1: 3e-51 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
