ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf16
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGACCAGGGGGTCGAGTGGC miRNA* CACTCGACCAGGGGGTCGAGT mismatches: 4 bulges: 0 |
pre-miRNA
AAGTGATACTCGACCAGGGGGTCGAGTGGCGTCATCGAGTGGCCTGAGCTGAGGTTACTCGATCTGGGGGTCCAGTAGATGGGAAGAATGGCTCCAAAGT
CACTCGACCAGGGGGTCGAGTATGGCG
dot-bracket secondary structure
..((.((((((((((....(((((((((((...((((((((((((......)))))))))))).(((((.((((.....))))........)))))..))
)))))))))....)))))))))).)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGTGATACTCGACCAGGGGGTCGAGTGGCGTCATCGAGTGGCCTGAGCTGAGGTTACTCGATCTGGGGGTCCAGTAGATGGGAAGAATGGCTCCAAAGT
CACTCGACCAGGGGGTCGAGTATGGCG
dot-bracket secondary structure
..((.((((((((((....(((((((((((...((((((((((((......)))))))))))).(((((.((((.....))))........)))))..))
)))))))))....)))))))))).)).
SIMILARITIES| miRBase no hits PMRD ath-miRf10391-akr: 5e-68 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ath-miRf10391-akr from PMRD (MNEST047491) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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