ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf17
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCGACCTCGTGGTCGAGTG miRNA* CTCGACCTGGGGGTCGAGTGA mismatches: 2 bulges: 0 |
pre-miRNA
GTCTGGCAGTGAAGGTGAAGGCACTCGACCTGGGGGTCGAGTGATGTGATCGAGTGGTGTCAGAAGATACTCGACTTCTAGGTTGAGTGACGAGGTCGAG
TGGTGGTCTGATGATGGAGGTGAAGGCACTCGACCTCGTGGTCGAGTGGTGAAGTGAAGTGGTGATGT
dot-bracket secondary structure
.(((........)))......(((((((((..(((((((((((......(((.....(((((((...(((((((((((...(((....))))))))))))
))....))))))).......)))...)))))))))))..)))))))))....................
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GTCTGGCAGTGAAGGTGAAGGCACTCGACCTGGGGGTCGAGTGATGTGATCGAGTGGTGTCAGAAGATACTCGACTTCTAGGTTGAGTGACGAGGTCGAG
TGGTGGTCTGATGATGGAGGTGAAGGCACTCGACCTCGTGGTCGAGTGGTGAAGTGAAGTGGTGATGT
dot-bracket secondary structure
.(((........)))......(((((((((..(((((((((((......(((.....(((((((...(((((((((((...(((....))))))))))))
))....))))))).......)))...)))))))))))..)))))))))....................
SIMILARITIES| miRBase no hits PMRD ath-miRf11124-akr: 1e-54 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
