ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf17
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCGGCCAGGTAGTCGAGTG miRNA* CTCGACCTGGTGGTCGAGTGA mismatches: 4 bulges: 0 |
pre-miRNA
GGAGGTGATGATACTCGACCTGGTGGTCGAGTGAAGTGATCGAGTGACTCTCATGGTGGTACTCGGCCAGGTAGTCGAGTGGTGAAGTCTT
dot-bracket secondary structure
......(((..((((((((....((((((((((..((((..(((...))))))).....))))))))))....)))))))).....)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
GGAGGTGATGATACTCGACCTGGTGGTCGAGTGAAGTGATCGAGTGACTCTCATGGTGGTACTCGGCCAGGTAGTCGAGTGGTGAAGTCTT
dot-bracket secondary structure
......(((..((((((((....((((((((((..((((..(((...))))))).....))))))))))....)))))))).....)))..
SIMILARITIES| miRBase no hits PMRD ath-miRf10513-akr: 3e-44 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
