ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCTG miRNA* GCATTGTCATTGGGAGGTTGTG mismatches: 4 bulges: 1 |
pre-miRNA
ACCACGTGTTGCATTGTCATTGGGAGGTTGTGGCCGGAAATGTGAGAATCCTGATGATGCTGCTGCAACTGA
dot-bracket secondary structure
..((..(((.(((.(((((((((((..((.....((....))...)).))))))))))).))).)))..)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACCACGTGTTGCATTGTCATTGGGAGGTTGTGGCCGGAAATGTGAGAATCCTGATGATGCTGCTGCAACTGA
dot-bracket secondary structure
..((..(((.(((.(((((((((((..((.....((....))...)).))))))))))).))).)))..)).
SIMILARITIES| miRBase sbi-MIR172f: 0.00001 PMRD psi-miR172: 0.00001 microPC miR172: 0.0002 | UniProt sp|Q9SK03|RAP27_ARATH: 0.0000004 RFAM mir-172: 0.0002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
