ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACAGGGAACAAGCAGAGCATG mismatches: 5 bulges: 0 |
pre-miRNA
ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCT
CCCTCTTT
dot-bracket secondary structure
..(((((.(((.(((((((...((((.((((((...(((.....(((((((...........))))))).)))...)))))).))))...))))))).))
).))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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ATGAGAGAGAGACAGGGAACAAGCAGAGCATGGATTGAGTTTACTAAAACATTAAACGACTCTGTTTTGTCTCTACCCATGCACTGCCTCTTCCCTGGCT
CCCTCTTT
dot-bracket secondary structure
..(((((.(((.(((((((...((((.((((((...(((.....(((((((...........))))))).)))...)))))).))))...))))))).))
).))))).
SIMILARITIES| miRBase ath-MIR408: 1e-56 PMRD ath-miR408: 1e-56 microPC miR408: 0.000000000001 | UniProt no hits RFAM MIR408: 4e-53 | most similar mature miRNAs |
Identical with: ath-miRf11042-akr from PMRD (MNEST048142) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
