ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf17
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCACGTGGTTGAGT miRNA* TCGGCTTGGTGGTAGAGTGAT mismatches: 3 bulges: 0 |
pre-miRNA
TTTGGTGGTACTCGGCTTGGTGGTAGAGTGATCGAGTGAAGGTGATGAAGGTACTCGACCACGTGGTTGAGTAGTGTGATC
dot-bracket secondary structure
........(((((((((..(((((.(((((.(((..((....)).)))...))))).)))))..)))))))))........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
Source sequences
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TTTGGTGGTACTCGGCTTGGTGGTAGAGTGATCGAGTGAAGGTGATGAAGGTACTCGACCACGTGGTTGAGTAGTGTGATC
dot-bracket secondary structure
........(((((((((..(((((.(((((.(((..((....)).)))...))))).)))))..)))))))))........
SIMILARITIES| miRBase no hits PMRD ath-miRf10169-akr: 8e-35 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
Source sequences
download this record
