ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf354
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTTCTCCCACACGGCGGCGC miRNA* GCCGCCGTGGCGGAGAAAGAG mismatches: 4 bulges: 0 |
pre-miRNA
GAGAAGCTCGTTTCTCCCACACGGCGGCGCTTTAAGAACCGGCGTTTCGTGTAGCTGGAATCTCGAAAAGAGATGTAACCGATTCGCCGTGAAGTGTGAC
GCCGCCGTGGCGGAGAAAGAGACCACT
dot-bracket secondary structure
......(((.(((((((..((((((((((...((.....(((((..(((.((.((....(((((.....))))))).)))))..))))).....))...)
)))))))))..))))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GAGAAGCTCGTTTCTCCCACACGGCGGCGCTTTAAGAACCGGCGTTTCGTGTAGCTGGAATCTCGAAAAGAGATGTAACCGATTCGCCGTGAAGTGTGAC
GCCGCCGTGGCGGAGAAAGAGACCACT
dot-bracket secondary structure
......(((.(((((((..((((((((((...((.....(((((..(((.((.((....(((((.....))))))).)))))..))))).....))...)
)))))))))..))))))))))......
SIMILARITIES| miRBase no hits PMRD ath-miRf10712-akr: 8e-61 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ath-miRf10712-akr from PMRD (MNEST047812) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
