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ABOUT THIS RECORD
ID:
MNEST003377
species:
Arabidopsis thaliana
miRNA family:
MIRf436
source:
miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTTGAGCTCGGATTAACTGCA
miRNA*
CGAGAGGCTGAGCTCAGAAT
mismatches:
5
bulges:
1
View larger
pre-miRNA
TCGGCTCAATTTATAAGTGTGACTGCGAGC
GTTGAGCTCGGATTAACTGCA
AGAATTATTTTTATCTTTTGAATGTAGCTCGATGCTAGGTGAACTAAGC
TTTTTGAGTCGGGACTCAATTTAGAGCTTGACTTCAAAAATCAAAAAATGTAAAGCACGAATACTTATCTTGATGGGAGAAGAAATGG
CGAGAGGCTGAG
CTCAGAAT
TGCTGTTCCAAAGGTAGAGTTGCATTG
dot-bracket secondary structure
...((....(((((...((.(((.((((..
.((((((((((.((...(((.
...(((.(((((.((.((.((..(((..(((.((((...((........
(((((((((((((.(((......))))))))).)))))))..........)).))))))).)))...))..)).)).))))).))).)
))..)).)))))
)))))..)
))).))).))...)))))...))....
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10928-akr
:
6e-23
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record