ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf294
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTGCTCACTCTCTTTTTGT miRNA* AGAAGAGAGTGAGCACACAA mismatches: 1 bulges: 1 |
pre-miRNA
AAATATATGTTGATGGGGGAAAAGAAGTTGACAGAAGAGAGTGAGCACACAAAGGGGAAGTTGTATAAAAGTTTTGTATATGGTTGCTTTTGCGTGCTCA
CTCTCTTTTTGTCATAACTTCTCCTTCATGAATCTTCCTTA
dot-bracket secondary structure
........(((.((((((((...(((((((((((((((((((((((((.((((((.((...((((((((...))))))))...)).)))))).)))))))
))))).))))))))..))))))))))))).)))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATATATGTTGATGGGGGAAAAGAAGTTGACAGAAGAGAGTGAGCACACAAAGGGGAAGTTGTATAAAAGTTTTGTATATGGTTGCTTTTGCGTGCTCA
CTCTCTTTTTGTCATAACTTCTCCTTCATGAATCTTCCTTA
dot-bracket secondary structure
........(((.((((((((...(((((((((((((((((((((((((.((((((.((...((((((((...))))))))...)).)))))).)))))))
))))).))))))))..))))))))))))).)))........
SIMILARITIES| miRBase ath-MIR156d: 1e-62 PMRD ath-miR156d: 1e-62 microPC miR156: 2e-43 | UniProt no hits RFAM mir-156: 2e-43 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045266) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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