ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf458
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTCGAGTGAATGATGATGGT miRNA* GATGATGGTGATACTCGACCTG mismatches: 4 bulges: 1 |
pre-miRNA
GTAGAGTGATTGGTTGAGTGAATGATGATGGTGATACTCGACCTGTTGGTAGAGTGATTGGTCGAGTGAATGATGATGGTGATACTCGACCTGTTGGTAG
dot-bracket secondary structure
.......(((.(((((((((.((.((.((.((..(((((((((.((((......)))).))))))))).)).)).)).))..))))))))).))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAGAGTGATTGGTTGAGTGAATGATGATGGTGATACTCGACCTGTTGGTAGAGTGATTGGTCGAGTGAATGATGATGGTGATACTCGACCTGTTGGTAG
dot-bracket secondary structure
.......(((.(((((((((.((.((.((.((..(((((((((.((((......)))).))))))))).)).)).)).))..))))))))).))).....
SIMILARITIES| miRBase no hits PMRD ath-miRf11001-akr: 3e-41 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
