ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf16
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCAGAGGGTCGAGT miRNA* TCGACCTGGTGGTCGAGTGGT mismatches: 2 bulges: 0 |
pre-miRNA
GGTGAATATACTCGACCAGAGGGTCGAGTGGTGAGTTGAAGTTGTGAAGTCCCCTACTCGACCAGGGGGTCGAGTGGTCTGTTGAGGTCTTGAAGCTTCT
ACTCGACCTGGTGGTCGAGTGGTTTGA
dot-bracket secondary structure
....((..((((((((((..(((((((((((.(((((.(((...(((......((((((((((....))))))))))....)))....)))..)))))))
)))))))))..))))))))))..))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTGAATATACTCGACCAGAGGGTCGAGTGGTGAGTTGAAGTTGTGAAGTCCCCTACTCGACCAGGGGGTCGAGTGGTCTGTTGAGGTCTTGAAGCTTCT
ACTCGACCTGGTGGTCGAGTGGTTTGA
dot-bracket secondary structure
....((..((((((((((..(((((((((((.(((((.(((...(((......((((((((((....))))))))))....)))....)))..)))))))
)))))))))..))))))))))..))..
SIMILARITIES| miRBase no hits PMRD ath-miRf10152-akr: 7e-46 microPC no hits | UniProt no hits RFAM MIR854: 2e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
