ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: miR160c
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTACAAGGAGTCAAGCATG miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
TTTGTCGTTATGCCTGGCTCCCTGTATGCCACGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGCTGGCGTACAAGGAGTCAAGCATGACCAGA
A
dot-bracket secondary structure
......(((((((.(((((((.((((((((.((.((((...(((((((((....)))))))))))))))...)))))))).))))))).)))))))....
.
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TTTGTCGTTATGCCTGGCTCCCTGTATGCCACGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGCTGGCGTACAAGGAGTCAAGCATGACCAGA
A
dot-bracket secondary structure
......(((((((.(((((((.((((((((.((.((((...(((((((((....)))))))))))))))...)))))))).))))))).)))))))....
.
SIMILARITIES| miRBase ath-MIR160c: 3e-41 PMRD ath-miR160c: 3e-41 microPC miR160: 3e-41 | UniProt no hits RFAM mir-160: 8e-39 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST046598) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
