ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
TTGGAGGTGTATCGAGATGAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAATTTGGTTGTGGAAGAACACAAAGCAAGAATCGGTCGA
TAAACCTCTGCATCCAGCGCTCACTTTGCCTCTCTTTACCAGCAAT
dot-bracket secondary structure
.....((((....((((.((((((((((..(((((.((((.((((.(((((((..(((.((.......(((((......)))))..)).)))..))))))
).)))).)))).))))).....))))))))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTGGAGGTGTATCGAGATGAGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAATTTGGTTGTGGAAGAACACAAAGCAAGAATCGGTCGA
TAAACCTCTGCATCCAGCGCTCACTTTGCCTCTCTTTACCAGCAAT
dot-bracket secondary structure
.....((((....((((.((((((((((..(((((.((((.((((.(((((((..(((.((.......(((((......)))))..)).)))..))))))
).)))).)))).))))).....))))))))))))))))))......
SIMILARITIES| miRBase vvi-MIR162: 6e-25 PMRD vvi-miR162: 6e-25 microPC miR162: 1e-41 | UniProt no hits RFAM MIR162_2: 2e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
