ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR170
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATTGAGCCGCGTCAATATC miRNA* TATTGGCGTGCCTCAATTTGA mismatches: 2 bulges: 0 |
pre-miRNA
AGGTGGTGATGGGGGAAGTGTTGTATGAAGCACAAATCAAGGTATTGGCGTGCCTCAATTTGAAGACATGGTTAAGATGAAAACCAGCCATGTAATTTTA
ATTGAGCCGCGTCAATATCTCATCTTGCACTTCTTTCCATCTTCATCCCAATCTCAAA
dot-bracket secondary structure
.(((((.((((((((((((((...((((............((((((((((((.(((((((.(((.((((((((............))))))))..))).)
)))))).))))))))))))))))...))))))).))))))).)))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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AGGTGGTGATGGGGGAAGTGTTGTATGAAGCACAAATCAAGGTATTGGCGTGCCTCAATTTGAAGACATGGTTAAGATGAAAACCAGCCATGTAATTTTA
ATTGAGCCGCGTCAATATCTCATCTTGCACTTCTTTCCATCTTCATCCCAATCTCAAA
dot-bracket secondary structure
.(((((.((((((((((((((...((((............((((((((((((.(((((((.(((.((((((((............))))))))..))).)
)))))).))))))))))))))))...))))))).))))))).)))))...........
SIMILARITIES| miRBase vvi-MIR171b: 0.0000000001 PMRD gma-miR170n: 8e-40 microPC miR171: 3e-39 | UniProt no hits RFAM MIR171_1: 0.000000002 | most similar mature miRNAs |
Identical with: gma-miR170n from PMRD (MNEST048566) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
