ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCCATATCTGGGGAGCTTC miRNA* AGCTGCTTAGCTATGGATCCC mismatches: 5 bulges: 0 |
pre-miRNA
TGAGGATCTTACTGGGTGAATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCAATAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGG
GGAGCTTCATTTGCCTTTATAGTATTAA
dot-bracket secondary structure
....(((.(((..((((((((.(((((.(((((.((((((..((((((..(((((((.((.....))....)).)))))..))))))..)))))).))))
).))))).))))))))...))).)))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TGAGGATCTTACTGGGTGAATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCAATAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGG
GGAGCTTCATTTGCCTTTATAGTATTAA
dot-bracket secondary structure
....(((.(((..((((((((.(((((.(((((.((((((..((((((..(((((((.((.....))....)).)))))..))))))..)))))).))))
).))))).))))))))...))).)))..
SIMILARITIES| miRBase gma-MIR159a: 3e-66 PMRD gma-miR159a: 3e-66 microPC miR159: 1e-68 | UniProt no hits RFAM MIR159: 0.0000005 | most similar mature miRNAs |
Identical with: miR159 from microPC (MNEST045395) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
