ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTAGTCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
ATCTCATGAGGAGGAGGTGTTGGTGATGCTGTTGACAGAAGATAGAGAGCACTGATGATGAAATGCATGAAAGGGAATGGCATCTCACTCCTTTGTGCTC
TCTAGTCTTCTGTCATCATCCTTCTCCCTCCCCTCTCT
dot-bracket secondary structure
.......((((.(((((....((.((((....((((((((((((((((((((.((.(((((.((((.............)))).))).)).)).))))))
)))).)))))))))).))))))....)))))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
ATCTCATGAGGAGGAGGTGTTGGTGATGCTGTTGACAGAAGATAGAGAGCACTGATGATGAAATGCATGAAAGGGAATGGCATCTCACTCCTTTGTGCTC
TCTAGTCTTCTGTCATCATCCTTCTCCCTCCCCTCTCT
dot-bracket secondary structure
.......((((.(((((....((.((((....((((((((((((((((((((.((.(((((.((((.............)))).))).)).)).))))))
)))).)))))))))).))))))....)))))))))...
SIMILARITIES| miRBase gma-MIR156e: 4e-66 PMRD gma-miR156e: 4e-66 microPC miR157: 3e-42 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: gma-MIR156e from miRBase (MNEST040429) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
