ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCAG miRNA* GGGCAAGTTCTCCATTGGCAGG mismatches: 3 bulges: 1 |
pre-miRNA
AGCTGCATTACAGGGCAAGTTCTCCATTGGCAGGTAGCCACTATGATATGCATCTCATAAATATTTGCAACTTTCTTAATGTGCAATCTGCCAAAGGAGA
TTTGCCCAGCGATTCTCC
dot-bracket secondary structure
............((((((((.((((.(((((((((.((((.((.((..((((.............))))....)).)).)).)).))))))))).)))))
)))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCTGCATTACAGGGCAAGTTCTCCATTGGCAGGTAGCCACTATGATATGCATCTCATAAATATTTGCAACTTTCTTAATGTGCAATCTGCCAAAGGAGA
TTTGCCCAGCGATTCTCC
dot-bracket secondary structure
............((((((((.((((.(((((((((.((((.((.((..((((.............))))....)).)).)).)).))))))))).)))))
)))))))...........
SIMILARITIES| miRBase mtr-MIR399a: 7e-18 PMRD mtr-miR399a: 7e-18 microPC miR399: 4e-50 | UniProt no hits RFAM mir-399: 0.0000000000005 | most similar mature miRNAs |
Identical with: miR399 from microPC (MNEST044956) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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