ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTTCCTGGCT miRNA* CTGGGAACAGGCAGGGCACG mismatches: 2 bulges: 1 |
pre-miRNA
CCAAAGGGTGAGGGAGTTAACAGGAAGAGACAGGACAAAGGCTGGGAACAGGCAGGGCACGAATGGAGCTATCAACAGAAAATGGTAAAGTGAGAATGAA
AGGAGAGAGAGAGAGAGAGATCTGTTGTGGCTACGCTCATGCACTGCCTCTTTCCTGGCTTCTGTTTTTTTCTTATTCAACTCCATTTCCCTCTCTAT
dot-bracket secondary structure
....((((.((.((((((...(((((((((((((.....(((((((((.((((((.(((.((.((.(((((.(((((((.....................
....................)))))))))))).)).)).))).))))))..)))))))))))))))))))))).....)))))).)).))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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CCAAAGGGTGAGGGAGTTAACAGGAAGAGACAGGACAAAGGCTGGGAACAGGCAGGGCACGAATGGAGCTATCAACAGAAAATGGTAAAGTGAGAATGAA
AGGAGAGAGAGAGAGAGAGATCTGTTGTGGCTACGCTCATGCACTGCCTCTTTCCTGGCTTCTGTTTTTTTCTTATTCAACTCCATTTCCCTCTCTAT
dot-bracket secondary structure
....((((.((.((((((...(((((((((((((.....(((((((((.((((((.(((.((.((.(((((.(((((((.....................
....................)))))))))))).)).)).))).))))))..)))))))))))))))))))))).....)))))).)).))))......
SIMILARITIES| miRBase ahy-MIR408: 0.000003 PMRD gma-miR408a: 5e-29 microPC miR408: 1e-29 | UniProt no hits RFAM MIR408: 5e-39 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
