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ABOUT THIS RECORD
ID:
MNEST003457
species:
Glycine max
miRNA family:
MIR408
source:
miRNEST
Taxonomy by NCBI:
Glycine max
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCACTGCCTCTTCCCTGGCT
miRNA*
CTGGGAACAGGCAGGGCACG
mismatches:
2
bulges:
1
View larger
pre-miRNA
GGAGGGAGTTAACAGGAAGAGACAGGACAAAGG
CTGGGAACAGGCAGGGCACG
AATGGAGCTATCAACAGAAAATGGTAAAGTGAGAATGGAAGGAGAGA
GAGAGAGAGAGATCTGTTGTGGCTACGCTCA
TGCACTGCCTCTTCCCTGGCT
CTGTCTCTTTCCTATTCCAACTCCATTTCCCTCTCTAT
dot-bracket secondary structure
(((.((((((((.((((((((((((......((
(((((((.((((((.(((.(
(.((.(((((.(((((((.............................
............)))))))))))).)).)).
))).)))))).))))).))))
))))))).))))).))..))))))...)))........
SIMILARITIES
miRBase
vvi-MIR408
:
0.0000000002
PMRD
gma-miR408a
:
1e-26
microPC
miR408
:
1e-29
UniProt
no hits
RFAM
MIR408: 3e-49
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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