ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGAAAGCTGTGGGAGAATAT miRNA* GCTTTTCCACAGCTTTCTTGA mismatches: 1 bulges: 0 |
pre-miRNA
CTCAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCATCTTATATCTCTCCACCTCCAGGATTTTAAGCCCTAGAAGCTCAAGAAAGC
TGTGGGAGAATATGGCAATTCAGGCT
dot-bracket secondary structure
....((.((((((((((.(((((((((((((((((((.(((((.......((((.((((...........))))..))))....))))).))))))))))
))))))))).))))))....))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCATCTTATATCTCTCCACCTCCAGGATTTTAAGCCCTAGAAGCTCAAGAAAGC
TGTGGGAGAATATGGCAATTCAGGCT
dot-bracket secondary structure
....((.((((((((((.(((((((((((((((((((.(((((.......((((.((((...........))))..))))....))))).))))))))))
))))))))).))))))....))))))
SIMILARITIES| miRBase gma-MIR396b: 2e-67 PMRD gma-miR396b: 2e-67 microPC miR396: 0.000002 | UniProt no hits RFAM MIR396: 5e-19 | most similar mature miRNAs |
Identical with: gma-miR396b from PMRD (MNEST048579) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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