ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
TCTTCAATATCATGGCTCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCAAAGAGTTCCTTTGCATGCATGCCATGGCACTCTTACTCCCAAAT
CTTGTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGATAGGGTCAACAACGGACTA
dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((..((((((((.((...(((....)))...)).)))))...........
.)))...)))))))))).)))))))))))).)))))))).)))))))...........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
degradome data
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deep sequencing data evidence
TCTTCAATATCATGGCTCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCAAAGAGTTCCTTTGCATGCATGCCATGGCACTCTTACTCCCAAAT
CTTGTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGATAGGGTCAACAACGGACTA
dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((..((((((((.((...(((....)))...)).)))))...........
.)))...)))))))))).)))))))))))).)))))))).)))))))...........
SIMILARITIES| miRBase gma-MIR396a: 1e-75 PMRD gma-miR396a: 1e-75 microPC miR396: 2e-52 | UniProt no hits RFAM MIR396: 4e-17 | most similar mature miRNAs |
Identical with: gma-miR396a from PMRD (MNEST048578) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
