miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST003464
species: Glycine max
miRNA family: MIRf459
source: miRNEST

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTTGTATTCTTCCACAGCTT

miRNA*
 GCTGTGGGAAGATACAGATAG

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TCTTCAATATCATGGCTCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCAAAGAGTTCCTTTGCATGCATGCCATGGCACTCTTACTCCCAAAT
CTTGTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGATAGGGTCAACAACGGACTA

dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((..((((((((.((...(((....)))...)).)))))...........
.)))...)))))))))).)))))))))))).)))))))).)))))))...........


SIMILARITIES
miRBase gma-MIR396a: 1e-75

PMRD gma-miR396a: 1e-75

microPC miR396: 2e-52		UniProt no hits

RFAM MIR396: 4e-17		most similar mature miRNAs

Identical with: gma-miR396a from PMRD (MNEST048578)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record




Liczniki na strone;