ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGGCCTTGGCTATA mismatches: 2 bulges: 0 |
pre-miRNA
GCACGAAGAGGCAGAGAGTGTAGTGCAGCCAAGGATGACTTGCCGGCATTAGCCAAGTGAATGAGCATCATATATATATATATATATATATATATATATA
TGACTCATGTTCTTGTCGGCAAGTTGGCCTTGGCTATATTGGACTCTCTTCTTTTCATGT
dot-bracket secondary structure
(((.(((((((.(((((((.(((((.((((((((.(((((((((((((..(((.......(((((..((((((((((((((((....)))))))))))))
)))))))))))..))))))))))))).)))))))).))))).)))))))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GCACGAAGAGGCAGAGAGTGTAGTGCAGCCAAGGATGACTTGCCGGCATTAGCCAAGTGAATGAGCATCATATATATATATATATATATATATATATATA
TGACTCATGTTCTTGTCGGCAAGTTGGCCTTGGCTATATTGGACTCTCTTCTTTTCATGT
dot-bracket secondary structure
(((.(((((((.(((((((.(((((.((((((((.(((((((((((((..(((.......(((((..((((((((((((((((....)))))))))))))
)))))))))))..))))))))))))).)))))))).))))).)))))))))))))).)))
SIMILARITIES| miRBase mtr-MIR169b: 0.00000000003 PMRD gso-miR169a: 2e-18 microPC miR169: 2e-18 | UniProt no hits RFAM MIR169_2: 0.00000000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
